A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2025-03-01, 20:15 EAT
based on data in:
/home/bosire/Desktop/Maniacs/Phylo_genomics/QC_Results
General Statistics
| Sample Name | N50 (Kbp) | Assembly Length (Mbp) |
|---|---|---|
| GCA_000149925.1_ASM14992v1_genomic | 965.0Kbp | 88.7Mbp |
| GCA_002762355.2_KSU_Pgt_99KS76A_2.0_genomic | 4517.8Kbp | 180.5Mbp |
| GCA_008520325.1_Pgt_Ug99_genomic | 876.5Kbp | 176.2Mbp |
| GCA_008522505.1_Pgt_210_genomic | 5144.7Kbp | 176.9Mbp |
| GCA_903797515.1_Puccinia_graminis_f._sp._tritici_UK_01_genomic | 53.6Kbp | 164.3Mbp |
| GCF_000149925.1_ASM14992v1_genomic | 965.0Kbp | 88.7Mbp |
QUAST
Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086
Assembly Statistics
| Sample Name | N50 (Kbp) | N75 (Kbp) | L50 (K) | L75 (K) | Largest contig (Kbp) | Length (Mbp) |
|---|---|---|---|---|---|---|
| GCA_000149925.1_ASM14992v1_genomic | 965.0Kbp | 407.3Kbp | 0.0K | 0.1K | 3081.4Kbp | 88.7Mbp |
| GCA_002762355.2_KSU_Pgt_99KS76A_2.0_genomic | 4517.8Kbp | 3171.9Kbp | 0.0K | 0.0K | 7041.3Kbp | 180.5Mbp |
| GCA_008520325.1_Pgt_Ug99_genomic | 876.5Kbp | 443.1Kbp | 0.1K | 0.1K | 3019.4Kbp | 176.2Mbp |
| GCA_008522505.1_Pgt_210_genomic | 5144.7Kbp | 3570.1Kbp | 0.0K | 0.0K | 7278.5Kbp | 176.9Mbp |
| GCA_903797515.1_Puccinia_graminis_f._sp._tritici_UK_01_genomic | 53.6Kbp | 26.8Kbp | 0.8K | 1.9K | 572.4Kbp | 164.3Mbp |
| GCF_000149925.1_ASM14992v1_genomic | 965.0Kbp | 407.3Kbp | 0.0K | 0.1K | 3081.4Kbp | 88.7Mbp |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.
BUSCO
5.8.0
Assesses genome assembly and annotation completeness.URL: http://busco.ezlab.orgDOI: 10.1093/bioinformatics/btv351
BUSCO v2 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.Lineage: fungi_odb10
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| BUSCO | 5.8.0 |