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        Note that additional data was saved in multiqc_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

        Please remember to cite the tools that you use in your analysis.

        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.25

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-03-01, 20:15 EAT based on data in: /home/bosire/Desktop/Maniacs/Phylo_genomics/QC_Results

        General Statistics

        Showing 0/6 rows and 2/2 columns.
        Sample NameN50 (Kbp)Assembly Length (Mbp)
        GCA_000149925.1_ASM14992v1_genomic
        965.0Kbp
        88.7Mbp
        GCA_002762355.2_KSU_Pgt_99KS76A_2.0_genomic
        4517.8Kbp
        180.5Mbp
        GCA_008520325.1_Pgt_Ug99_genomic
        876.5Kbp
        176.2Mbp
        GCA_008522505.1_Pgt_210_genomic
        5144.7Kbp
        176.9Mbp
        GCA_903797515.1_Puccinia_graminis_f._sp._tritici_UK_01_genomic
        53.6Kbp
        164.3Mbp
        GCF_000149925.1_ASM14992v1_genomic
        965.0Kbp
        88.7Mbp

        QUAST

        Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086

        Assembly Statistics

        Showing 0/6 rows and 6/6 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)
        GCA_000149925.1_ASM14992v1_genomic
        965.0Kbp
        407.3Kbp
        0.0K
        0.1K
        3081.4Kbp
        88.7Mbp
        GCA_002762355.2_KSU_Pgt_99KS76A_2.0_genomic
        4517.8Kbp
        3171.9Kbp
        0.0K
        0.0K
        7041.3Kbp
        180.5Mbp
        GCA_008520325.1_Pgt_Ug99_genomic
        876.5Kbp
        443.1Kbp
        0.1K
        0.1K
        3019.4Kbp
        176.2Mbp
        GCA_008522505.1_Pgt_210_genomic
        5144.7Kbp
        3570.1Kbp
        0.0K
        0.0K
        7278.5Kbp
        176.9Mbp
        GCA_903797515.1_Puccinia_graminis_f._sp._tritici_UK_01_genomic
        53.6Kbp
        26.8Kbp
        0.8K
        1.9K
        572.4Kbp
        164.3Mbp
        GCF_000149925.1_ASM14992v1_genomic
        965.0Kbp
        407.3Kbp
        0.0K
        0.1K
        3081.4Kbp
        88.7Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        BUSCO

        Version: 5.8.0

        Assesses genome assembly and annotation completeness.URL: http://busco.ezlab.orgDOI: 10.1093/bioinformatics/btv351

        BUSCO v2 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

        Lineage: fungi_odb10

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        BUSCO5.8.0

        MultiQC v1.25 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.